Adapting the rhizome concept to an extended definition of viral quasispecies and the implications for molecular evolution

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The article discusses how the rhizome concept, proposing novel perspectives on complex entities' organization and interdependence, can be applied to biological evolution, particularly in understanding the dynamics of RNA virus populations. It introduces a framework for interpreting viral quasispecies as a result of dynamic interconnections and interdependence between viral sequences and host cells. This concept highlights the medical implications of the diverse mutant spectra of viruses and their potential for fitness loss and gain.

Abstract

The rhizome concept proposed by Gilles Deleuze and Félix Guattari offers a novel perspective on the organization and interdependence of complex constellations of heterogeneous entities, their mapping and their ruptures. The emphasis of the present study is placed on the dynamics of contacts and communication among such entities that arise from experimentation, without any favored hierarchy or origin. When applied to biological evolution, the rhizome concept integrates all types of heterogeneity resulting from “symbiotic” relationships among living beings (or their genomic material), horizontal genetic transfer, recombination and mutation, and breaks away from the approach that gives rise to the phylogenetic tree of life. It has already been applied to describe the dynamics and evolution of RNA viruses. Thus, here we introduce a novel framework for the interpretation the viral quasispecies concept, which explains the evolution of RNA virus populations as the result of dynamic interconnections and multifaceted interdependence between highly heterogeneous viral sequences and its inherently heterogeneous host cells. The rhizome network perspective underlines even further the medical implications of the broad mutant spectra of viruses that are in constant flow, given the multiple pathways they have available for fitness loss and gain.

Introduction

There is a growing acknowledgment that organisms are complex societies or ecosystems comprising different species (and, in particular, including their microbiotas), as expressed by Scott G (2019)

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